CDS

Accession Number TCMCG016C26252
gbkey CDS
Protein Id OMO54456.1
Location join(35111..35175,35804..35915,36269..36371,36799..38181,39372..39442,39822..39896,40155..41540,41661..42005,42513..42713,42799..42887,43038..43245)
Organism Corchorus capsularis
locus_tag CCACVL1_27779

Protein

Length 1345aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01014972.1
Definition putative transcription cofactor [Corchorus capsularis]
Locus_tag CCACVL1_27779

EGGNOG-MAPPER Annotation

COG_category S
Description mediator of RNA polymerase II transcription subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K14972        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0003712        [VIEW IN EMBL-EBI]
GO:0003713        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010565        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0019216        [VIEW IN EMBL-EBI]
GO:0019217        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031490        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042304        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045723        [VIEW IN EMBL-EBI]
GO:0045834        [VIEW IN EMBL-EBI]
GO:0045923        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046889        [VIEW IN EMBL-EBI]
GO:0046890        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0062012        [VIEW IN EMBL-EBI]
GO:0062013        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAACAGTTGATTGGAGAACCCAGTTGCCGCCTGAATCACGATCAAGGATCGTCAACAAGATAATGGATACATTGAAGAGACACCTTCCATTTTCTGGGCAAGAGGGTTTAAATGAACTCAGGAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACAGCCGCAAGCAGCCAGTCTGATTATCTAAGGAGAATATCCTTGAAGATGCTTACAATGGAAACAAAGTCTCAGAATACCATGCCCAACCCTGGGAGCAACAGCAAACCTCCTGATCCAGGTTCTCAGGGAATGCAGAACCAAGTTCACAGTCAAGGGCAGTCCATTCCTATCCCTCTACAAAGTAATCAGCCTCAAGCCCGTCAACAAATGTTGCCCCATAATGTCCCAAATAACATGGCATCTGCTGGAGTTCAAACTTCTGCTGGTTTACAATCTGGAATGCCTCCCGTTTCTGGTCTTACCCAGAATTCTATTCCCAATGTTGGCCAGAATTCCAATATGCAGAACATGTCTGGAATTTCTCAGAACTCAATGGGGCAAGGGATGACATCCAATATATATGCCAATCAGCAGAGGCAAATGCAAGGGAGGCAACAGGTGCTTCCGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCTATATCATCAGCAGTTACAACAGCAAATTATGAAGCAAAAGATTCAACCGGGAAATCTCCAACCCTCACTTATGCCATCTCACATGCAGCAGCAGCAGCAAAACCTATTACCAACTAATCAATTGCAATCTGGTCAGCAATCTGGTATGCAAACATCCTCCGTTATGCAGCCATCTGCCATGCAATCAACTCCTCTTCCTGGTCTTCAACAGAATCAACAGTCTTCTCTGCAACAGTCCACACAATCGATGCTTCAGCAGCATCAACAGTCAGTCCTTAGACAGCAGCAACAGCCACAACAGGCTGCCGGTCCTGGTATTCATCAACAGCAAACAATGATGCCTCAGCAGCACCAGCAGCCTCCACCGTCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAGCCACATATGATGGGACAACAGACAAATGCTGCAAATATACAGCAGAATCAGTTAATTGGACAACAAAGCAGCATTGGGGACATGCAGCAGCAGAGATTGCTAGGTCAGCCTAATAATCTTCCAAACATGCAGCAGCAGCAGCAGCAGCAGTTAATGGCTCAACAGAGCAATATTTCAAATATGCATCAGCAACAATTGGGTCCTCAGGGTAACATTTCGGGACTACAGCAGCAGCAGCAGCAGCAGCAGTTGATGGGGACCCAGTCGGGTAACTCAAGCATGCAAACTAATCAGCAACTACACATGCTACCTCAGTCTAAGGTTCCTCTCCAACAAACACAGCAGAATGCACCGAATATGTTACCAACTCAAGGACAGACATCTCAGCAGCAACAGATGATGTCGCAGATGCAATCACAGTCTAGTCAGTTGCAGCAACAGTTGGGGTTGCAACAGCAGCCTAATCAATTACAACGAGATATGGCGCAGAGGCTTCAAGCATCAGGTCAAGCATCAAGTTCCTTGCTTCAATCACAAAATCTGATAGATCAGCAAAAGCAGTTGTACCAATCACAAAGAGCTGTTCCGGAGACATCATCGACATCTTTAGATTCCACAGCTCAAACTGGACAGGCAAATGGGGGTGATTGGCAAGAAGAGGTTTATCAGAAGATCAAAGCCATGAGAGATCATTACTTACCTGAAATAAATGAGATGCATCAGAAAATTTCTGCCAAATTGGAACAGCAAGATTCTCTTTCCCAGCCGCAGCAGAAGTCAGACCAACTTGAGAAGTTGAAAATATTCAAGTCCATGTTGGATCGCATTATAGGTTTCTTATCAGTTAGCAAAGCCAATGTCTTACCCACTTACAAGGATAAGTTGAGTTCGTATGAGAAGCAGATAGTAAATTTTATAAGTTCAAATAGGCCTAGGAAGCCCTCAACAATGCAGCAAGGACAGCTTCCTCCGCCTCACATGCATTCCATGCAGCAGCCCCAACCCCAGATTAATCAGACACAGTCTCATGATAATCAAATGAACCCTCAGTTGCAGTCAGTAAATTTACAAGGTTCTGTACCAACAATGCAGAACAATATGACAGGCTTGCAGCATAATTCTTTGTCTTCTTTACCTGGGGTTTCAACAGCTCAACAGACCATGCTAAATTCACTGCAGCCAGGATCCAATTTGGATTCAGGACAAGGAAATGCCTTAGGCTCCATGCAGCAGGTTGCTACAGGACCTTTACAGCAAAATCCTGTGAGTACCTCACAACAGGCAAATATTAGCAGTTTGACATCACAAAGCAATTTAAATGTTCTGCAGCAAAACATGAATCCTCTTCAGTCAAACTCCAACATGCTTCAGCAGCAGCATTTGAAACAACAGCAAGAACAGCAAATGCAGCTGAAACAACAGTATCAACAGCGCCAGATGCATCAGCAGCAACAGCTTATGCAGAAGCAGCAGCTACTTCAACAGCAACAACAGCAGCAGCAGCAGCAGCTGCACCAGCAAGCGAAGCAACAGCTGCCAACACAGATGCAGACACACCAGATGCCACAGCTGCATCAGGTGAATGATGTAAATGATATGAAAATGAGACAGGGGATGGGTGTTAAGCCAGGGGTCTTTCAACAGCATCTGCCAGCAGGCCAGCGTCAATCTTATCCCCATCAGCAGTTGAAACCAGGTTCTCAATATCCAATTTCTTCACCTCAGCTCCTTCAGACTGCATCTCCACAGATGCCTCAGCATTCTTCCCCACAGGTTGATCAGCAAAGCCTGCTAACATCTATCTCAAAAACTGGAACCCCTTTGCAATCTGCAAACTCACCTTTTGTTGTTCCTTCACCTTCAACTCCCTTAGCTCCATCACCTATGCCTGGGGAATCTGAGAAACCCGTTCCAGGCAGTTCTTCTCTCTCAAATGCTGCAAATGTTGGACATCAACAAGGAACTGGTGTTCAAGCGGTCTCCCAATCCCTTGCAATTGGCACTCCTGGGATATCAGCCTCACCTCTTCTTGCAGAGTTCACTGGTGCAGATGGCACCCATGCCAATGCTTTGACAACTGTTTCTAGCAAGTCAAACATTACGGAGCAGCCACTTGAACGTTTAATGAAGGCGGTGAAATCCATGTCACCTGTAGCATTGGGTGCATCTGTAAGTGACATTGGCTCCGTTGTCAGCATGACTGATAGGATAGCAGGCTCAGCGCCGGGTAATGGCTCTAGAGCTGCTGTGGGTGAGGATCTGGTTGCCATGACAAAGTGTCGCCTGCAAGCGAGAAATTTCATCACTCAAGATGGAATGAGCGGGACAAAGAAAATGAGGCGCTACACTAGTGCCATGCCCCTAAATGTTGTGTCATCTGCAGGCAGCATGAATGATAGTTTCAAACAATTAACTGGTTCAGAGACATCTGAATTGGAGTCAACTGCAACATCTAGTGTCAAGAGGCCAAGAATTGAGGCTAATCATGCCCTTTTGGAAGAAATAAGGGAAATAAACCAACGTCTTATAGACACAGTGGTTGATATCAGTGATGAAGATGTTGACCCAACTGCTGCAGCAGCGAATGTTGACGGCAGTGAAGGAACCATTGTCAAGTGCTCCTTCAGTGCTGTGGCTCTCAGTTCAAACTTAAAATCACAATATATGTCAGCACAAATGTCACCAATTCAGCCGCTACGATTGCTAGTTCCCACAAATTATCCAAATTGCTCTCCAATACTATTAGACAAGTTTCCAGTTGAAGTCAGTAAGGAGTACGAAGACCTTTCGGTTAAGGCGAAGTCAAGGTTTAGTATATCACTGCGAACTCTTTCACAGCCAATGTCACTTGGAGAAATAGCAAGGACTTGGGATATTTGTGCCCGAGCCGTTATTTCTGAGCATGCACAACAGAGCGGTGGAGGCAGCTTTAGCTCAAAATATGGGACTTGGGAGAACTGCTTGAGCGCGGCGTAG
Protein:  
METVDWRTQLPPESRSRIVNKIMDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNTMPNPGSNSKPPDPGSQGMQNQVHSQGQSIPIPLQSNQPQARQQMLPHNVPNNMASAGVQTSAGLQSGMPPVSGLTQNSIPNVGQNSNMQNMSGISQNSMGQGMTSNIYANQQRQMQGRQQVLPQQQQQQQQQQQQQLYHQQLQQQIMKQKIQPGNLQPSLMPSHMQQQQQNLLPTNQLQSGQQSGMQTSSVMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAAGPGIHQQQTMMPQQHQQPPPSQQQQQQQQQQQQQQPHMMGQQTNAANIQQNQLIGQQSSIGDMQQQRLLGQPNNLPNMQQQQQQQLMAQQSNISNMHQQQLGPQGNISGLQQQQQQQQLMGTQSGNSSMQTNQQLHMLPQSKVPLQQTQQNAPNMLPTQGQTSQQQQMMSQMQSQSSQLQQQLGLQQQPNQLQRDMAQRLQASGQASSSLLQSQNLIDQQKQLYQSQRAVPETSSTSLDSTAQTGQANGGDWQEEVYQKIKAMRDHYLPEINEMHQKISAKLEQQDSLSQPQQKSDQLEKLKIFKSMLDRIIGFLSVSKANVLPTYKDKLSSYEKQIVNFISSNRPRKPSTMQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSVNLQGSVPTMQNNMTGLQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVATGPLQQNPVSTSQQANISSLTSQSNLNVLQQNMNPLQSNSNMLQQQHLKQQQEQQMQLKQQYQQRQMHQQQQLMQKQQLLQQQQQQQQQQLHQQAKQQLPTQMQTHQMPQLHQVNDVNDMKMRQGMGVKPGVFQQHLPAGQRQSYPHQQLKPGSQYPISSPQLLQTASPQMPQHSSPQVDQQSLLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPVPGSSSLSNAANVGHQQGTGVQAVSQSLAIGTPGISASPLLAEFTGADGTHANALTTVSSKSNITEQPLERLMKAVKSMSPVALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTKKMRRYTSAMPLNVVSSAGSMNDSFKQLTGSETSELESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISDEDVDPTAAAANVDGSEGTIVKCSFSAVALSSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRTLSQPMSLGEIARTWDICARAVISEHAQQSGGGSFSSKYGTWENCLSAA